PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG016606t2
Common NameTCM_016606
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bZIP
Protein Properties Length: 407aa    MW: 43105.5 Da    PI: 6.7481
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG016606t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.21.3e-21306368163
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN  L++e++++k e+++l +e+
  Thecc1EG016606t2 306 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLKEENANLRSEVNRIKCEYEQLLAEN 368
                       89*********************************************************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.2E-30197IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.1E-55136273No hitNo description
Gene3DG3DSA:1.20.5.1701.7E-17299364No hitNo description
PfamPF001708.7E-20306368IPR004827Basic-leucine zipper domain
SMARTSM003384.8E-20306370IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.059308371IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.31E-10309365No hitNo description
CDDcd147023.69E-25311361No hitNo description
PROSITE patternPS000360313328IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGSSEMDKTA KEKEPKTPPA ATTQEQSSTT NSGTVNADWS GFQAYSPIPP HGFLASSPQA  60
PPYMWGVQHI IPPYGTPPHP YVAMYPHGGI YAHPSIPPGS YPFSPFAMPS PNGILEASGN  120
TPGTMETDGK PSDVKEKLPI KRSKGSLGSL NMITGKNNNL GKTSGASANG VYSKSAESGS  180
EGTSEGSDAN SQNDSQMKSG GRQDSGEGEA SQNGSAAHDP QNGGPNAPHT MVNTAMAIVP  240
ISTAGAPTAV PGPTTNLHIG MDYWGTPASS AVPAMRGKVP STAVAGGIVT PASRDSVQSQ  300
LWLQDERELK RQRRKQSNRE SARRSRLRKQ AECDELAQRA EVLKEENANL RSEVNRIKCE  360
YEQLLAENTS LKERLGEIPG HEDLKSGRND QHTNNDGQTE LVQGSH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322328RRSRLRK
2322329RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007040724.10.0BZIP domain class transcription factor isoform 1
RefseqXP_007040725.10.0BZIP domain class transcription factor isoform 1
SwissprotQ501B21e-171BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A061G6P80.0A0A061G6P8_THECC; BZIP domain class transcription factor isoform 1
STRINGGLYMA09G34170.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-156basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]