PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG016606t2

Common Name

TCM_016606

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bZIP

Protein Properties

Length: 407aa MW: 43105.5 Da PI: 6.7481

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG016606t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	68.2	1.3e-21	306	368	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN L++e++++k e+++l +e+ Thecc1EG016606t2 306 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLKEENANLRSEVNRIKCEYEQLLAEN 368 89*********************************************************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	3.2E-30	1	97	IPR012900	G-box binding protein, multifunctional mosaic region
Pfam	PF16596	2.1E-55	136	273	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.7E-17	299	364	No hit	No description
Pfam	PF00170	8.7E-20	306	368	IPR004827	Basic-leucine zipper domain
SMART	SM00338	4.8E-20	306	370	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	13.059	308	371	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.31E-10	309	365	No hit	No description
CDD	cd14702	3.69E-25	311	361	No hit	No description
PROSITE pattern	PS00036	0	313	328	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MGSSEMDKTA KEKEPKTPPA ATTQEQSSTT NSGTVNADWS GFQAYSPIPP HGFLASSPQA 60 PPYMWGVQHI IPPYGTPPHP YVAMYPHGGI YAHPSIPPGS YPFSPFAMPS PNGILEASGN 120 TPGTMETDGK PSDVKEKLPI KRSKGSLGSL NMITGKNNNL GKTSGASANG VYSKSAESGS 180 EGTSEGSDAN SQNDSQMKSG GRQDSGEGEA SQNGSAAHDP QNGGPNAPHT MVNTAMAIVP 240 ISTAGAPTAV PGPTTNLHIG MDYWGTPASS AVPAMRGKVP STAVAGGIVT PASRDSVQSQ 300 LWLQDERELK RQRRKQSNRE SARRSRLRKQ AECDELAQRA EVLKEENANL RSEVNRIKCE 360 YEQLLAENTS LKERLGEIPG HEDLKSGRND QHTNNDGQTE LVQGSH*

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MGSSEMDKTA KEKEPKTPPA ATTQEQSSTT NSGTVNADWS GFQAYSPIPP HGFLASSPQA  60
PPYMWGVQHI IPPYGTPPHP YVAMYPHGGI YAHPSIPPGS YPFSPFAMPS PNGILEASGN  120
TPGTMETDGK PSDVKEKLPI KRSKGSLGSL NMITGKNNNL GKTSGASANG VYSKSAESGS  180
EGTSEGSDAN SQNDSQMKSG GRQDSGEGEA SQNGSAAHDP QNGGPNAPHT MVNTAMAIVP  240
ISTAGAPTAV PGPTTNLHIG MDYWGTPASS AVPAMRGKVP STAVAGGIVT PASRDSVQSQ  300
LWLQDERELK RQRRKQSNRE SARRSRLRKQ AECDELAQRA EVLKEENANL RSEVNRIKCE  360
YEQLLAENTS LKERLGEIPG HEDLKSGRND QHTNNDGQTE LVQGSH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	322	328	RRSRLRK
2	322	329	RRSRLRKQ

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00291	DAP	Transfer from AT2G35530	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007040724.1	0.0	BZIP domain class transcription factor isoform 1
Refseq	XP_007040725.1	0.0	BZIP domain class transcription factor isoform 1
Swissprot	Q501B2	1e-171	BZP16_ARATH; bZIP transcription factor 16
TrEMBL	A0A061G6P8	0.0	A0A061G6P8_THECC; BZIP domain class transcription factor isoform 1
STRING	GLYMA09G34170.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35530.1	1e-156	basic region/leucine zipper transcription factor 16

Link Out ? help Back to Top
Phytozome	Thecc1EG016606t2
Entrez Gene	18606829

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]